Objective To investigate the changes in blood lipid levels in adolescents with bipolar disorder and their relationship with regional brain structure as assessed by imaging studies. Method A retrospective study was conducted involving 72 adolescents with bipolar disorder treated at the Department of Psychiatry, Chang'an Hospital, from May 2022 to May 2024. The observation group consisted of 45 males and 27 females, the age was (13.26±1.51) years old. Patients were divided into a depressive episode group (31 cases) and a manic episode group (41 cases) based on the cause of onset. Treatment effects were assessed after 3 months of therapy. According to the Young Mania Rating Scale (YMRS) and the Montgomery-Asberg Depression Rating Scale (MADRS), patients were classified into a good prognosis group (YMRS score < 13 points, MADRS < 22 points, 45 cases) and a poor prognosis group (YMRS score ≥ 13 points, MADRS ≥ 22 points, 27 cases). A control group of 52 healthy individuals was selected during the same period, comprising 34 males and 18 females, the age was (13.31±1.54) years old. Blood lipid levels [total cholesterol (TC), triglycerides (TG), low-density lipoprotein cholesterol (LDL-C), high-density lipoprotein cholesterol (HDL-C)] were measured using an automatic biochemical analyzer on the second day after admission for the observation group and on the day of health examination for the control group. All patients underwent resting-state functional magnetic resonance imaging (fMRI) to collect imaging parameters. Correlation analysis was performed using Pearson correlation, and statistical analysis was conducted using t tests. Results The TC, TG, LDL-C, and HDL-C levels in the observation group were (5.89±0.94, 2.12±0.31, 3.75±0.86, 1.53±0.35) mmol/L, compared to (5.03±0.78, 1.34±0.26, 3.11±0.58, 1.74±0.29) mmol/L in the control group, with all differences being statistically significant (t=5.555, 15.196, 4.946, and 3.645, all P<0.001). No statistically significant differences were found between the depressive episode group and the manic episode group regarding TC, TG, LDL-C, and HDL-C levels (all P>0.05). The TC, TG, and LDL-C levels in the poor prognosis group were higher than those in the good prognosis group, while HDL-C levels were lower in the poor prognosis group (all P<0.05). Regional brain structure regional homogeneity (ReHo) values: the ReHo values for the left cerebellum, right cerebellum, left cuneus, right cuneus, and right superior temporal gyrus in the observation group were 0.23±0.04, -0.21±0.06, 0.12±0.05, -0.05±0.01, and 0.21±0.06, respectively, while the control group had values of 0.51±0.15, -0.42±0.12, -0.28±0.09, -0.19±0.04, and 0.39±0.09, with all differences being statistically significant (t=11.427, 9.714, 23.982, 21.538, and 10.163, all P<0.001). In the depressive episode group, the ReHo values for the left cerebellum, left cuneus, right cuneus, and right superior temporal gyrus were lower than those in the manic episode group, while the ReHo value for the right cerebellum was higher than in the manic episode group (all P<0.05). The ReHo values for the left cerebellum and right superior temporal gyrus in the poor prognosis group were lower than those in the good prognosis group, while the ReHo values for the right cerebellum, left cuneus, and right cuneus were higher than in the good prognosis group (all P<0.05). Pearson correlation results indicated that TC, TG, and LDL-C levels in adolescents with bipolar disorder were positively correlated with the ReHo values of the right cerebellum, left cuneus, and right cuneus, and negatively correlated with the ReHo values of the left cerebellum and right superior temporal gyrus (all P<0.05); HDL-C was negatively correlated with the ReHo values of the right cerebellum, left cuneus, and right cuneus, and positively correlated with the ReHo values of the left cerebellum and right superior temporal gyrus (all P<0.05). Conclusion The changes of blood lipid levels in patients with adolescent bipolar disorder are obvious, which are correlated with the ReHo value of regional brain structure, which can reflect the neuropathological changes of patients. Strengthening the magnetic resonance imaging examination of patients can evaluate the prognosis of patients.