International Medicine and Health Guidance News ›› 2024, Vol. 30 ›› Issue (8): 1307-1311.DOI: 10.3760/cma.j.issn.1007-1245.2024.08.016
• New Medical Advances • Previous Articles Next Articles
Advances in single-cell RNA sequencing in kidney disease
Zou Haozhen, Yang Jia, Xi Zhefan, Ji Rui, Dong Hua
Department of Nephrology, Binzhou Medical University Hospital, Binzhou 256603, China
Received:
2023-09-05
Online:
2024-04-15
Published:
2024-05-05
Contact:
Dong Hua, Email: donghua197704@sina.com
Supported by:
Shandong Province Medicine and Health Science and Technology Development Program (2016WS0048)
单细胞RNA测序技术在肾病中的研究进展
邹皓珍 杨佳 席哲帆 纪瑞 董华
滨州医学院附属医院肾内科,滨州 256603
通讯作者:
董华,Email:donghua197704@sina.com
基金资助:
山东省医药卫生科技发展计划(2016WS0048)
Zou Haozhen, Yang Jia, Xi Zhefan, Ji Rui, Dong Hua.
Advances in single-cell RNA sequencing in kidney disease [J]. International Medicine and Health Guidance News, 2024, 30(8): 1307-1311.
邹皓珍 杨佳 席哲帆 纪瑞 董华.
单细胞RNA测序技术在肾病中的研究进展 [J]. 国际医药卫生导报, 2024, 30(8): 1307-1311.
Add to citation manager EndNote|Ris|BibTeX
URL: http://www.imhgn.com/EN/10.3760/cma.j.issn.1007-1245.2024.08.016
[1] Balzer MS, Rohacs T, Susztak K. How many cell types are in the kidney and what do they do? [J]. Annu Rev Physiol, 2022, 84:507-531. DOI: 10.1146/annurev- physiol- 052521-121841. [2] Tang F, Barbacioru C, Wang Y, et al. mRNA-Seq whole-transcriptome analysis of a single cell[J]. Nat Methods, 2009, 6(5):377-382. DOI: 10.1038/nmeth.1315. [3] Islam S, Kjällquist U, Moliner A, et al. Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq[J]. Genome Res, 2011, 21(7):1160-1167. DOI: 10.1101/gr.110882.110. [4] Ramsköld D, Luo S, Wang YC, et al. Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells[J]. Nat Biotechnol, 2012, 30(8):777-782. DOI: 10.1038/nbt.2282. [5] Hashimshony T, Wagner F, Sher N, et al. CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification[J]. Cell Rep, 2012, 2(3):666-673. DOI: 10.1016/j.celrep.2012.08.003. [6] Sasagawa Y, Nikaido I, Hayashi T, et al. Quartz-Seq: a highly reproducible and sensitive single-cell RNA sequencing method, reveals non-genetic gene-expression heterogeneity[J]. Genome Biol, 2013, 14(4):R31. DOI: 10.1186/gb-2013-14-4-r31. [7] Picelli S, Faridani OR, Björklund AK, et al. Full-length RNA-seq from single cells using Smart-seq2[J]. Nat Protoc, 2014, 9(1):171-181. DOI: 10.1038/nprot. 2014.006. [8] Klein AM, Mazutis L, Akartuna I, et al. Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells[J]. Cell, 2015, 161(5):1187-1201. DOI: 10.1016/j.cell.2015.04.044. [9] Macosko EZ, Basu A, Satija R, et al. Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets[J]. Cell, 2015, 161(5):1202-1214. DOI: 10.1016/j.cell.2015.05.002. [10] Gierahn TM, Wadsworth MH, Hughes TK, et al. Seq-Well: portable, low-cost RNA sequencing of single cells at high throughput[J]. Nat Methods, 2017, 14(4):395-398. DOI: 10.1038/nmeth.4179. [11] Rosenberg AB, Roco CM, Muscat RA, et al. Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding[J]. Science, 2018, 360(6385):176-182. DOI: 10.1126/science.aam8999. [12] Potter SS. Single-cell RNA sequencing for the study of development, physiology and disease[J]. Nat Rev Nephrol, 2018, 14(8):479-492. DOI: 10.1038/s41581-018-0021-7. [13] Wu H, Kirita Y, Donnelly EL, et al. Advantages of single-nucleus over single-cell RNA sequencing of adult kidney: rare cell types and novel cell states revealed in fibrosis[J]. J Am Soc Nephrol, 2019, 30(1):23-32. DOI: 10.1681/ASN.2018090912. [14] Wyatt RJ, Julian BA. IgA nephropathy[J]. N Engl J Med, 2013, 368(25):2402-2414. DOI: 10.1056/NEJMra1206793. [15] Tang R, Meng T, Lin W, et al. A partial picture of the single-cell transcriptomics of human IgA nephropathy[J]. Front Immunol, 2021, 12:645988. DOI: 10.3389/fimmu.2021.645988. [16] 吴昌为.基于外周血单细胞转录组测序探讨IgA肾病发病机制[D].成都:电子科技大学,2020. [17] 金美玲,李艳春,王佳,等.基于生物信息学的IgA肾病基因富集及免疫细胞浸润分析[J].中华肾病研究电子杂志,2021,10(4):205-213.DOI:10.3877/cma.j.issn.2095-3216.2021. 04.004. [18] Ding Y, Li H, Xu L, et al. Identification and validation of prognostic biomarkers specifically expressed in macrophage in IgA nephropathy patients based on integrated bioinformatics analyses[J]. Front Mol Biosci, 2022, 9:884588. DOI: 10.3389/fmolb.2022.884588. [19] Zheng Y, Lu P, Deng Y, et al. Single-cell transcriptomics reveal immune mechanisms of the onset and progression of IgA nephropathy[J]. Cell Rep, 2020, 33(12):108525. DOI: 10.1016/j.celrep.2020.108525. [20] Chen Z, Zhang T, Mao K, et al. A single-cell survey of the human glomerulonephritis[J]. J Cell Mol Med, 2021, 25(10):4684-4695. DOI: 10.1111/jcmm.16407. [21] Zeng H, Wang L, Li J, et al. Single-cell RNA-sequencing reveals distinct immune cell subsets and signaling pathways in IgA nephropathy[J]. Cell Biosci, 2021, 11(1):203. DOI: 10.1186/s13578-021-00706-1. [22] Du W, Gao CY, You X, et al. Increased proportion of follicular helper T cells is associated with B cell activation and disease severity in IgA nephropathy[J]. Front Immunol, 2022, 13:901465. DOI: 10.3389/fimmu.2022.901465. [23] Zambrano S, He L, Kano T, et al. Molecular insights into the early stage of glomerular injury in IgA nephropathy using single-cell RNA sequencing[J]. Kidney Int, 2022, 101(4):752-765. DOI: 10.1016/j.kint.2021.12.011. [24] Abedini A, Zhu YO, Chatterjee S, et al. Urinary single-cell profiling captures the cellular diversity of the kidney[J]. J Am Soc Nephrol, 2021, 32(3):614-627. DOI: 10.1681/ASN.2020050757. [25] Stewart BJ, Ferdinand JR, Clatworthy MR. Using single-cell technologies to map the human immune system - implications for nephrology[J]. Nat Rev Nephrol, 2020, 16(2):112-128. DOI: 10.1038/s41581-019-0227-3. [26] Liu S, Zhao Y, Lu S, et al. Single-cell transcriptomics reveals a mechanosensitive injury signaling pathway in early diabetic nephropathy[J]. Genome Med, 2023, 15(1):2. DOI: 10.1186/s13073-022-01145-4. [27] Zhang X, Chao P, Zhang L, et al. Single-cell RNA and transcriptome sequencing profiles identify immune-associated key genes in the development of diabetic kidney disease[J]. Front Immunol, 2023, 14:1030198. DOI: 10.3389/fimmu.2023.1030198. [28] Xu J, Shen C, Lin W, et al. Single-cell profiling reveals transcriptional signatures and cell-cell crosstalk in anti-PLA2R positive idiopathic membranous nephropathy patients[J]. Front Immunol, 2021, 12:683330. DOI: 10.3389/fimmu.2021.683330. [29] Sealfon R, Mariani L, Avila-Casado C, et al. Molecular characterization of membranous nephropathy[J]. J Am Soc Nephrol, 2022, 33(6):1208-1221. DOI: 10.1681/ASN.2021060784. [30] Kong F, Ye S, Zhong Z, et al. Single-cell transcriptome analysis of chronic antibody-mediated rejection after renal transplantation[J]. Front Immunol, 2022, 12:767618. DOI: 10.3389/fimmu.2021.767618. [31] Teng L, Shen L, Zhao W, et al. SLAMF8 participates in acute renal transplant rejection via TLR4 pathway on pro-inflammatory macrophages[J]. Front Immunol, 2022, 13:846695. DOI: 10.3389/fimmu.2022.846695. [32] Zhuang Q, Li H, Peng B, et al. Single-cell transcriptomic analysis of peripheral blood reveals a novel B-cell subset in renal allograft recipients with accommodation[J]. Front Pharmacol, 2021, 12:706580. DOI: 10.3389/fphar.2021. 706580. [33] Xu H, Wang M, Li Y, et al. Blocking connexin 43 and its promotion of ATP release from renal tubular epithelial cells ameliorates renal fibrosis[J]. Cell Death Dis, 2022, 13(5):511. DOI: 10.1038/s41419-022-04910-w. [34] Wu R, Li J, Tu G, et al. Comprehensive molecular and cellular characterization of acute kidney injury progression to renal fibrosis[J]. Front Immunol, 2021, 12:699192. DOI: 10.3389/fimmu.2021.699192. [35] Portilla D, Xavier S. Role of intracellular complement activation in kidney fibrosis[J]. Br J Pharmacol, 2021, 178(14):2880-2891. DOI: 10.1111/bph.15408. [36] Lafzi A, Moutinho C, Picelli S, et al. Tutorial: guidelines for the experimental design of single-cell RNA sequencing studies[J]. Nat Protoc, 2018, 13(12):2742-2757. DOI: 10.1038/s41596-018-0073-y. [37] 邢海帆,范瑛.单细胞RNA测序应用于肾小球疾病研究的进展[J].上海交通大学学报(医学版),2022,42(10):1458-1465.DOI:10.3969/j.issn.1674-8115.2022.10.012. [38] 晁珊珊,卜鹏程.单细胞转录组测序技术发展及应用[J].中国细胞生物学学报,2019,41(5):834-840.DOI:10.11844/cjcb.2019.05.0005. [39] 高山凤,肖轩,张玲羽,等.单细胞测序技术在生殖研究中的应用[J].中国细胞生物学学报,2020,42(12):2234-2243.DOI:10.11844/cjcb.2020.12.0015. [40] Kaur H, Advani A. The study of single cells in diabetic kidney disease[J]. J Nephrol, 2021, 34(6):1925-1939. DOI: 10.1007/s40620-020-00964-1. |
[1] |
Zeng Xianhu, Li Ming, Li Zilong, Xiang Xu, Tian Hui, Li Huizhu, Ma Longjie, Fang Xiaoli, Chen Li, Tang Ran.
Research progress on ulcerative colitis in traditional Chinese and western medicines [J]. International Medicine and Health Guidance News, 2024, 30(9): 1415-1418. |
[2] |
Gao Wenwen, Zhang Xiang, Wang Hong, Yin Yanhui.
New progress in treatment of intestinal bacterial overgrowth [J]. International Medicine and Health Guidance News, 2024, 30(9): 1418-1421. |
[3] |
Sun Xiao, Liu Chengxia, Wang Na, Hao Jiahui, Chu Linlin, Li Chengyu.
Relationship between putrescine and macrophage polarization in gastric "inflammatory carcinoma transformation" [J]. International Medicine and Health Guidance News, 2024, 30(9): 1426-1429. |
[4] |
Li Chun, Du Qiaoting, Liu Lingling.
Progress in treatment of primiparae with postpartum lactation deficiency [J]. International Medicine and Health Guidance News, 2024, 30(9): 1446-1449. |
[5] |
He Xiangqin, Yang Fang, Ding Guofeng.
Research progress of traditional Chinese patent medicine related liver injury [J]. International Medicine and Health Guidance News, 2024, 30(9): 1450-1453. |
[6] |
Ma Lijun, Liu Zhanjun, Han Jiming.
Expression and significance of miR-150-5p and miR-135b in patients with diabetes nephropathy [J]. International Medicine and Health Guidance News, 2024, 30(9): 1454-1459. |
[7] |
Yang Shoujuan, Zhang Haitao, Cui Mingli, Wang Jian, Li Yang, Cheng Yanli.
Research progress of Wnt signaling pathway in acute myocardial infarction [J]. International Medicine and Health Guidance News, 2024, 30(8): 1291-1296. |
[8] |
Shao Shuang, Guo Jiwei, Meng Wei.
m6A and m5C methylation modification affects the initiation and development of cancers by regulating cellular proliferation and metastasis [J]. International Medicine and Health Guidance News, 2024, 30(8): 1316-1320. |
[9] |
Zhao Bo, Li Siwei, Xing Tian, Gao Ping, Zhu Hongzhe, Li Min.
Research progress of TRPV1 channel in infectious diseases [J]. International Medicine and Health Guidance News, 2024, 30(7): 1057-1062. |
[10] |
Li Mengqi, Li Peng, Du Gangqiang, Sun Hongsuo, Zhang Kai.
Research progress on incidence rate and surgical treatment of long bone nonunion [J]. International Medicine and Health Guidance News, 2024, 30(7): 1062-1066. |
[11] |
Ding Jiawen, Li Na.
Research progress on ESBLs positive Klebsiella pneumoniae [J]. International Medicine and Health Guidance News, 2024, 30(7): 1071-1074. |
[12] |
Liu Ruixi, Yang Yang, Gao Jinxiang.
Tolvaptan for intractable edema in a patient with diabetic nephropathy syndrome [J]. International Medicine and Health Guidance News, 2024, 30(7): 1172-1176. |
[13] |
Chen Xiaolin, Yang Zhen.
Research progress on the relevance of HR-HPV load and cervical precancerous lesions and cervical cancer [J]. International Medicine and Health Guidance News, 2024, 30(6): 932-935. |
[14] |
Zou Haozhen, Yang Jia, Xi Zhefan, Ji Rui, Dong Hua.
Advances in single-cell RNA sequencing in secondary nephrosis [J]. International Medicine and Health Guidance News, 2024, 30(6): 936-940. |
[15] |
Wang Yuwei, Li Rui, Liu Chao, Liang Kuixiang.
Research progress on diagnosis and prevention strategies of pregnancy associated venous thromboembolism [J]. International Medicine and Health Guidance News, 2024, 30(6): 940-945. |
Viewed | ||||||
Full text |
|
|||||
Abstract |
|
|||||